GenomicFeatures
Description
The GenomicFeatures package provides utilities for working with interval based genomic annotations. It builds on IntervalTrees to provide a data-structures and algorithms for various formats such as BED, GFF3, bigWig and bigBed.
Installation
You can install the GenomicFeatures package from the Julia REPL. Press ] to enter pkg mode, then enter the following command:
add GenomicFeaturesIf you are interested in the cutting edge of the development, please check out the develop branch to try new features before release.
Testing
GenomicFeatures is tested against Julia 1.X on Linux, OS X, and Windows.
Latest build status:
Contributing
We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.
Take a look at the contributing files detailed contributor and maintainer guidelines, and code of conduct.
Financial contributions
We also welcome financial contributions in full transparency on our open collective. Anyone can file an expense. If the expense makes sense for the development of the community, it will be "merged" in the ledger of our open collective by the core contributors and the person who filed the expense will be reimbursed.
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Questions?
If you have a question about contributing or using BioJulia software, come on over and chat to us on the Julia Slack workspace, or you can try the Bio category of the Julia discourse site.