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Bio.jl Documentation
Bio.jl Documentation
Installation
Bio.Seq: Biological Sequences
Biological symbols
Overview of sequences types
General-purpose sequences
Nucleotide k-mers
Reference sequences
Sequence search
Sequence composition
Sequence records
Sequence demultiplexing
Align: Sequence Alignments
Representing alignments
Aligned sequence
Operating on alignments
Pairwise alignment
Substitution matrices
Alignment file formats for high-throughput sequencing
Intervals: Genomic Interval Manipulation
Interval types
Collections of intervals
Intersection
Interval streams
Bio.Var: Biological Variation.
Identifying and counting mutations
Computing evolutionary and genetic distances
Bio.Structure: Macromolecular Structures
Parsing PDB files
Manipulating structures
Writing PDB files
Spatial calculations
Examples
Bio.Util: Utility Functions
Labelled square matrix parsers
Bio.Tools: Misc tools and function wrappers
BLAST wrapper
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